Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015825368.1_cds_XP_016502291.1_15946
CDS Infomation

[gene=LOC107820514] [db_xref=GeneID:107820514] [protein=cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X2] [protein_id=XP_016502291.1] [location=join(2936..2989,3073..3289,3637..3743,4267..4339,4443..4602,5046..5658,5899..6162,6266..6478,6558..7076,7202..7552,7640..8221)] [gbkey=CDS]
Sequence

ATGGCTGGTTCTCATTCTCGTAGTGAACTTCATGTTTTCCACACTGGAGATGATCAGCGA
CCTCAGCCAGCAGAAACCAGAGATCAGTCAGCAGCTTTGAAGAAGATATGCAAGATTTGT
GGAGACGAGATTGGAGTGAAGGAAAACGGGGAGGTGTTTGTTGCTTGTAGCGAGTGTGGA
TTCCCAGTTTGCAGGCCATGTTATGAGTATGAGAGGAGTGAAGGCAATCAGTCTTGCCCA
CATTGTCATTCTCGCTATAAGCGTCATAAAGGTTGTCCTAGAGTTGCAGGTGATGATGAA
GATGACTTTGATCATGATGATTTTGACCAAGAATTTCAGATCAAGAATCATCATACTTCT
CCCAACCACCCCCACTCGGAGAATGGAGACTATAATCAACAGCATCACCACGCAAATGGC
GCTGCTTATAATCAGTCCGTTACTGGAAGCGTGGTAGGGAAGGATTTGGAAGATGAACAA
AAAGAAACTTATGGTGACGCAGAATGGAAGGAAAGAGTTGAGAAATGGAAGAACCGGCAA
GAAAAGAGAGGTCTGGTAAGCAAATTGGGTGATGGTGGAAATGATCAAGCTGATGAAGAT
GATGACTATCTTTTGGCTGAAGCTCGGCAACCACTCTGGCGAAAAGTTCCACTTCCATCA
AGCCTAATTAGTCCATATCGCATAGTCATTGTACTCAGGCTTGTAGTTCTTGGATTCTTC
TTCCATTTCCGGATCTTAACACCAGCCTATGATGCTTATCCATTATGGATTATCTCTGTA
ATATGTGAAATATGGTTTGGTTTATCATGGATACTTGATCAGTTCCCCAAATGGTCACCC
ATAAACCGTGAAACTTACCTTGATCGATTGACATTGAGGTTTGAGCGTGAAGGTGAGCCG
AATCGTTTAGCTCCAGTGGATGTGTTTGTGAGTACAGTTGATCCACTTAAGGAGCCTCCT
ATTATCACTGCAAACACAGTTCTGTCAATCTTGGCTGTTGATTACCCTGTTGAGAAGGTC
AGCTGTTATGTATCAGATGATGGTGCCTCAATGCTGCTGTTTGATGCATTAGCAGAAACG
GCGGAATTCGCAAGGAGATGGGTGCCATTTTGTAAGAAATATAACGTAGAGCCTCGAGCA
CCTGATTTCTACTTCAATGAAAAGATTGATTACTTGAAAGATAAAGTTCAGCCTACCTTC
GTCAAGGACCGCAGAGCCATGAAGAGAGAATATGAAGAATTCAAGGTAAGAATTAATGCA
TTAGTGGCAAAGGCTCAGAAAAAACCAGAAGAAGGATGGGTAATGCAAGACGGAACTCCA
TGGCCTGGTAACAATACCAGAGACCATCCTGGTATGATTCAAGTTTATCTTGGTAGTGAA
GGTGCACTTGACGTTGAAGGAAAAGAGCTACCCCGCCTTGTCTATGTTTCCCGTGAGAAA
CGACCAGGCTATCAACACAACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTCTCT
GCAGTGCTGACGAATGCACCATTTATGTTGAACTTGGATTGTGATCACTACCTTAACAAC
AGCAAGGCAGTTAGAGAAGCCATGTGCTTTTTAATGGACCCACAAATTGGAAAGAAGCTC
TGTTATGTCCAATTTCCCCAGAGATTTGATGGTATTGATCGCCATGATCGATATGCCAAC
CGTAATGTTGTCTTCTTTGATATCAACATGAAAGGCCTGGATGGCATTCAAGGGCCAGTG
TATGTTGGAACAGGTTGTGTCTTCAACAGGCCGGCATTATACGGCTATGATCCACCTGTT
TCAGAGAAGCGGCCAAAGATGACATGTGATTGCTGGCCTAGTTGGTGCTGCTGCTGTTGT
GGTGGTTCAAGAAAGCCCAAGTCCAAGTCCAAGAAGAAGAGCATCAAGTCCTTACTTGGA
CTATATAGCAAGAAAAAGAGAACAATGAATGGAAAGAACTACACTAGGAAGCCATCTGGA
CCTGTCTTCGATCTTGAGGAAATTGAAGAAGGACTTGAAGGATATGATGAGCTTGAGAAA
TCATCTCTTATGTCCCAAAAGAACTTTGAGAAACGATTTGGGCAGTCCCCAGTTTTCATA
GCTTCCACACTCATGGAAGATGGTGGGCTTCCTGAAGGGACAAATCCAACAACACTCATA
AAAGAAGCCATTCATGTTATTAGCTGTGGGTATGAAGAGAAAACTGAGTGGGGCAAAGAG
ATTGGGTGGATTTATGGTTCTGTCACAGAGGACATTTTGACTGGATTCAAGATGCACTGC
AGAGGATGGAGATCAGTTTATTGCTGTCCAAAAAGAGCAGCTTTTAAGGGATCAGCTCCA
ATCAATCTATCAGACAGATTGCACCAAGTCCTGAGATGGGCTCTTGGTTCTGTTGAAATC
TTCATGAGTCGTCATTGTCCCCTTTGGTATGCCTGGGGTGGTAAACTTAAATTGTTGGAA
AGGCTAGCATACATTAACACCATTGTTTACCCATTCACTTCCATTGCTCTGCTAGCTTAC
TGCACCCTTCCAGCTGTATGCCTTCTCACTGGAAAATTTATCGTCCCAACACTTAACAAC
TTTGCAAGCATTTGGTTCATGGCTCTCTTCCTCTCCATCATAGTCACAAGCGTACTCGAG
CTGCGATGGAGTGGAGTAAGCATTGAGGCCTGGTGGCGTAACGAGCAATTTTGGGTCATT
GGTGGTGTTTCAGCACATTTGTTTGCAGTTTTCCAAGGCCTTCTTAAAGTTCTTGCTGGT
GTAGACACAAACTTTACCGTAACAGCAAAAGCAGCTGAGGACACTGAGTTTGGGGAGCTT
TACCTCTTCAAATGGACCACACTCCTCATCCCACCAACCACTCTGATCATCTTGAATATG
GTTGGTGTTGTGGCTGGTGTTTCGGATGCCATCAACAATGGTTATGGTTCATGGGGTCCT
CTCTTCGGAAAGTTATTCTTCGCCTTTTGGGTTATTGTCCATCTCTATCCTTTCCTAAAG
GGATTGATGGGCAGGCAGAATAGGACTCCCACCATTGTGGTCCTATGGTCAATTCTTCTT
GCTTCAATATTCTCACTGGTTTGGGTCAGAATAGACCCTTTCCTACCAAAACAGAAGGGC
CCTATACTCAAGCAGTGTGGAGTGGAATGCTAA

Peptide Sequence

PEP ID

XP_016502291.1
PEP Infomation

PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X2 [Nicotiana tabacum]
Sequence

MAGSHSRSELHVFHTGDDQRPQPAETRDQSAALKKICKICGDEIGVKENGEVFVACSECG
FPVCRPCYEYERSEGNQSCPHCHSRYKRHKGCPRVAGDDEDDFDHDDFDQEFQIKNHHTS
PNHPHSENGDYNQQHHHANGAAYNQSVTGSVVGKDLEDEQKETYGDAEWKERVEKWKNRQ
EKRGLVSKLGDGGNDQADEDDDYLLAEARQPLWRKVPLPSSLISPYRIVIVLRLVVLGFF
FHFRILTPAYDAYPLWIISVICEIWFGLSWILDQFPKWSPINRETYLDRLTLRFEREGEP
NRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVEKVSCYVSDDGASMLLFDALAET
AEFARRWVPFCKKYNVEPRAPDFYFNEKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINA
LVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREK
RPGYQHNKKAGAMNALVRVSAVLTNAPFMLNLDCDHYLNNSKAVREAMCFLMDPQIGKKL
CYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRPALYGYDPPV
SEKRPKMTCDCWPSWCCCCCGGSRKPKSKSKKKSIKSLLGLYSKKKRTMNGKNYTRKPSG
PVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPTTLI
KEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCCPKRAAFKGSAP
INLSDRLHQVLRWALGSVEIFMSRHCPLWYAWGGKLKLLERLAYINTIVYPFTSIALLAY
CTLPAVCLLTGKFIVPTLNNFASIWFMALFLSIIVTSVLELRWSGVSIEAWWRNEQFWVI
GGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNM
VGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILL
ASIFSLVWVRIDPFLPKQKGPILKQCGVEC

Transcript Sequence

Gene sequence data has not been registered.